PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT27961
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family NAC
Protein Properties Length: 225aa    MW: 24979.2 Da    PI: 8.582
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT27961genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.93.9e-53161451129
       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgel 99 
               lppG+rFhPtdee+++ yL++k+ +  +++ ++i evd++k ePw+Lpkk+k +e+ewyf++++d+ky+tg r+n+atk+gyWk+tgkdke+++   ++ l
  EMT27961  16 LPPGYRFHPTDEEIITSYLAPKILNPAFDA-TAIGEVDVNKNEPWELPKKAKMGENEWYFYCQKDRKYPTGIRTNQATKAGYWKTTGKDKEIVNPhcTSML 115
               79***************************9.88***************99999*****************************************9878888 PP

       NAM 100 vglkktLvfykgrapkgektdWvmheyrle 129
               +g+kktLvfykgrap+gekt+Wvmheyrle
  EMT27961 116 IGMKKTLVFYKGRAPSGEKTNWVMHEYRLE 145
               ****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-5910180IPR003441NAC domain
PROSITE profilePS5100555.8416179IPR003441NAC domain
PfamPF023655.6E-2817144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MADHLQVQQQ QQQLELPPGY RFHPTDEEII TSYLAPKILN PAFDATAIGE VDVNKNEPWE  60
LPKKAKMGEN EWYFYCQKDR KYPTGIRTNQ ATKAGYWKTT GKDKEIVNPH CTSMLIGMKK  120
TLVFYKGRAP SGEKTNWVMH EYRLEIGKQS TTGLPTAITN AASINASSKE YVVCRIFHKN  180
TGSGLSSMVS HEDVGTRPGN NDQGNGSGTT THKISSMSMG TDGAC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-4941833169NO APICAL MERISTEM PROTEIN
1ut4_B5e-4941833169NO APICAL MERISTEM PROTEIN
1ut7_A5e-4941833169NO APICAL MERISTEM PROTEIN
1ut7_B5e-4941833169NO APICAL MERISTEM PROTEIN
4dul_A5e-4941833169NAC domain-containing protein 19
4dul_B5e-4941833169NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFR8197640.0FR819764.1 Hordeum vulgare subsp. vulgare mRNA for NAC transcription factor (NAC019 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012465518.13e-81PREDICTED: NAC domain-containing protein 100
SwissprotQ9FLJ23e-78NC100_ARATH; NAC domain-containing protein 100
TrEMBLM8CVU91e-171M8CVU9_AEGTA; Protein CUP-SHAPED COTYLEDON 2
STRINGMLOC_72737.11e-130(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145237121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.12e-75Arabidopsis NAC domain containing protein 87